If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ), 'gf_id' => 'HOM05D000753', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000753' ), 'data_identifier' => 'HOM05D000753', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000753', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05980' => 'bna', 'A01p36920' => 'bna', 'A01p39310' => 'bna', 'A02p39750' => 'bna', 'A03p04910' => 'bna', 'A04p19730' => 'bna', 'A05p32350' => 'bna', 'A05p34980' => 'bna', 'A06p04620' => 'bna', 'A06p36130' => 'bna', 'A08p05000' => 'bna', 'A08p05030' => 'bna', 'A09p55630' => 'bna', 'A10p26500' => 'bna', 'Aa31LG10G5530' => 'aar', 'Aa31LG11G4570' => 'aar', 'Aa31LG2G17620' => 'aar', 'Aa31LG3G15960' => 'aar', 'Aa31LG8G1680' => 'aar', 'Aa31LG8G4380' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3549' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5770' => 'aag', 'Actinidia01059' => 'ach', 'Actinidia01060' => 'ach', 'Actinidia06398' => 'ach', 'Actinidia18504' => 'ach', 'Actinidia18835' => 'ach', 'Actinidia35182' => 'ach', 'Ah.04g163770' => 'amhyb', 'Ah.05g168870' => 'amhyb', 'Ah.09g226080' => 'amhyb', 'Ah.12g064140' => 'amhyb', 'Ah.14g080020' => 'amhyb', 'AL1G54820' => 'aly', 'AL1G62330' => 'aly', 'AL3G26780' => 'aly', 'AL3G30510' => 'aly', 'AL3G41140' => 'aly', 'AL4G16950' => 'aly', 'AL6G21860' => 'aly', 'AL6G37110' => 'aly', 'AL7G19450' => 'aly', 'Aqoxy1G02850' => 'aox', 'Aqoxy2G00409' => 'aox', 'Aqoxy2G01014' => 'aox', 'Aqoxy5G00334' => 'aox', 'Aqoxy5G02205' => 'aox', 'Aqoxy5G02206' => 'aox', 'Aqoxy6G01527' => 'aox', 'Aqoxy7G02247' => 'aox', 'Aqoxy7G03713' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SSI2G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.40W8ZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63YDIT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6KC6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CS2NGB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDF5ZB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP1R10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9V4C0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDVY4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R03DYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT3RX0' => 'arhy', 'AT1G48230' => 'ath', 'AT1G53660' => 'ath', 'AT2G25520' => 'ath', 'AT3G14410' => 'ath', 'AT3G17430' => 'ath', 'AT4G32390' => 'ath', 'AT5G11230' => 'ath', 'AT5G25400' => 'ath', 'ATR0691G299' => 'atr', 'ATR1098G054' => 'atr', 'ATR1136G027' => 'atr', 'Atru.chr4.3141' => 'acertr', 'Atru.chr5.893' => 'acertr', 'Atru.chr7.2400' => 'acertr', 'AUR62001480' => 'cqu', 'AUR62002618' => 'cqu', 'AUR62011124' => 'cqu', 'AUR62013367' => 'cqu', 'AUR62016150' => 'cqu', 'AUR62022452' => 'cqu', 'AUR62024910' => 'cqu', 'AUR62030632' => 'cqu', 'AUR62037933' => 'cqu', 'AUR62039325' => 'cqu', 'AUR62041787' => 'cqu', 'BcaB01g06321' => 'bca', 'BcaB04g17456' => 'bca', 'BcaB04g20843' => 'bca', 'BcaB06g25387' => 'bca', 'BcaB06g25846' => 'bca', 'BcaB06g28066' => 'bca', 'BcaB07g33781' => 'bca', 'BcaB08g35186' => 'bca', 'BcaB08g37079' => 'bca', 'BcaC01g06826' => 'bca', 'BcaC02g08345' => 'bca', 'BcaC02g08346' => 'bca', 'BcaC03g17903' => 'bca', 'BcaC04g19250' => 'bca', 'BcaC05g28791' => 'bca', 'BcaC07g37162' => 'bca', 'BcaC07g38529' => 'bca', 'BcaC07g40865' => 'bca', 'BcaC08g43015' => 'bca', 'BcaC08g43017' => 'bca', 'BcaC09g48407' => 'bca', 'BcaC09g48700' => 'bca', 'BcaC09g52020' => 'bca', 'BcaC09g52023' => 'bca', 'BcaNung02268' => 'bca', 'BolC1t00655H' => 'bol', 'BolC1t04654H' => 'bol', 'BolC1t04964H' => 'bol', 'BolC2t12017H' => 'bol', 'BolC3t13073H' => 'bol', 'BolC4t24864H' => 'bol', 'BolC5t33640H' => 'bol', 'BolC5t33970H' => 'bol', 'BolC6t35396H' => 'bol', 'BolC7t44772H' => 'bol', 'BolC8t47347H' => 'bol', 'BolC8t51434H' => 'bol', 'BolC8t52636H' => 'bol', 'BolC9t59388H' => 'bol', 'BraA01t00564Z' => 'bra', 'BraA01t03751Z' => 'bra', 'BraA01t03974Z' => 'bra', 'BraA02t08940Z' => 'bra', 'BraA03t09829Z' => 'bra', 'BraA04t17563Z' => 'bra', 'BraA05t22312Z' => 'bra', 'BraA06t23666Z' => 'bra', 'BraA06t26535Z' => 'bra', 'BraA08t32522Z' => 'bra', 'BraA09t40965Z' => 'bra', 'BraA10t44707Z' => 'bra', 'C01p06600' => 'bna', 'C01p46810' => 'bna', 'C01p50110' => 'bna', 'C02p59540' => 'bna', 'C03p05640' => 'bna', 'C04p33010' => 'bna', 'C04p55470' => 'bna', 'C05p49000' => 'bna', 'C05p52930' => 'bna', 'C06p02700' => 'bna', 'C07p42450' => 'bna', 'C08p05330' => 'bna', 'C08p38630' => 'bna', 'C08p51100' => 'bna', 'C09p65650' => 'bna', 'CAN.G1003.13' => 'can', 'CAN.G1230.9' => 'can', 'CAN.G219.53' => 'can', 'CAN.G398.22' => 'can', 'CAN.G497.100' => 'can', 'CAN.G529.45' => 'can', 'CAN.G594.1' => 'can', 'CAN.G6.24' => 'can', 'CAN.G90.13' => 'can', 'CAN.G904.17' => 'can', 'CANSAT25G1945' => 'cansat', 'CANSAT56G1666' => 'cansat', 'CANSAT78G2121' => 'cansat', 'CARHR037860' => 'chi', 'CARHR043950' => 'chi', 'CARHR089370' => 'chi', 'CARHR092750' => 'chi', 'CARHR115900' => 'chi', 'CARHR188110' => 'chi', 'CARHR202110' => 'chi', 'CARHR240310' => 'chi', 'Carub.0001s3737' => 'cru', 'Carub.0001s4293' => 'cru', 'Carub.0003s1412' => 'cru', 'Carub.0003s1715' => 'cru', 'Carub.0004s0521' => 'cru', 'Carub.0006s0970' => 'cru', 'Carub.0006s2321' => 'cru', 'Ca_03172_v3' => 'car', 'Ca_03461_v3' => 'car', 'Ca_09239_v3' => 'car', 'Ca_15729_v3' => 'car', 'Ca_21380_v3' => 'car', 'Ca_21685_v3' => 'car', 'Ca_26461_v3' => 'car', 'Ca_30148_v3' => 'car', 'CBR_g30903' => 'cbr', 'CBR_g51221' => 'cbr', 'Cc01_g17330' => 'ccan', 'Cc05_g10130' => 'ccan', 'Cc06_g08570' => 'ccan', 'Cc08_g00840' => 'ccan', 'CDE04G3027' => 'cde', 'CDE06G1262' => 'cde', 'CDE07G1617' => 'cde', 'CDE07G1952' => 'cde', 'CDE12G0400' => 'cde', 'CDE12G0720' => 'cde', 'Cfa002826' => 'cfa', 'Cfa003364' => 'cfa', 'Cfa012623' => 'cfa', 'Cfa013163' => 'cfa', 'Cfa015724' => 'cfa', 'Cfa019446' => 'cfa', 'Cfa019447' => 'cfa', 'Cfa022716' => 'cfa', 'Cfa025281' => 'cfa', 'Ciclev10005167m.g' => 'ccl', 'Ciclev10009147m.g' => 'ccl', 'Ciclev10010813m.g' => 'ccl', 'Ciclev10021024m.g' => 'ccl', 'CiPaw.01G129900' => 'cil', 'CiPaw.02G069700' => 'cil', 'CiPaw.02G069800' => 'cil', 'CiPaw.03G243600' => 'cil', 'CiPaw.04G170800' => 'cil', 'CiPaw.07G124100' => 'cil', 'CiPaw.07G221900' => 'cil', 'CiPaw.08G012000' => 'cil', 'CiPaw.08G084100' => 'cil', 'CiPaw.12G011200' => 'cil', 'ClCG04G007460' => 'cla', 'ClCG05G006840' => 'cla', 'ClCG05G017000' => 'cla', 'ClCG07G010570' => 'cla', 'ClCG08G013270' => 'cla', 'ClCG11G002990' => 'cla', 'COL.COLO4_04753' => 'col', 'COL.COLO4_17405' => 'col', 'COL.COLO4_18837' => 'col', 'COL.COLO4_34522' => 'col', 'COL.COLO4_35290' => 'col', 'Cpa.g.c28770.3' => 'cpa', 'Cpa.g.sc146.29' => 'cpa', 'Cpa.g.sc75.40' => 'cpa', 'Cpa.g.sc77.101' => 'cpa', 'Cre02.g106200' => 'cre', 'Cre03.g162000' => 'cre', 'Cre08.g363600' => 'cre', 'Cre08.g382350' => 'cre', 'Cre09.g408428' => 'cre', 'Cre09.g413700' => 'cre', 'Cre09.g415900' => 'cre', 'Cre10.g452750' => 'cre', 'Cre14.g622700' => 'cre', 'Cre17.g702700' => 'cre', 'CsaV3_2G002810' => 'csa', 'CsaV3_2G032000' => 'csa', 'CsaV3_3G015490' => 'csa', 'CsaV3_3G046480' => 'csa', 'CsaV3_4G007740' => 'csa', 'CsaV3_4G025800' => 'csa', 'CsaV3_6G000210' => 'csa', 'CSS0001830' => 'camsi', 'CSS0006993' => 'camsi', 'CSS0007674' => 'camsi', 'CSS0009575' => 'camsi', 'CSS0010959' => 'camsi', 'CSS0011353' => 'camsi', 'CSS0017685' => 'camsi', 'CSS0018557' => 'camsi', 'CSS0020138' => 'camsi', 'CSS0022887' => 'camsi', 'CSS0024325' => 'camsi', 'CSS0025188' => 'camsi', 'CSS0027027' => 'camsi', 'CSS0028185' => 'camsi', 'CSS0030033' => 'camsi', 'CSS0032718' => 'camsi', 'CSS0036063' => 'camsi', 'CSS0038298' => 'camsi', 'CSS0038867' => 'camsi', 'CSS0040050' => 'camsi', 'CSS0040914' => 'camsi', 'CSS0042988' => 'camsi', 'CSS0047211' => 'camsi', 'CSS0047455' => 'camsi', 'CSS0048394' => 'camsi', 'DCAR_002549' => 'dca', 'DCAR_003093' => 'dca', 'DCAR_009190' => 'dca', 'DCAR_012306' => 'dca', 'DCAR_013801' => 'dca', 'DCAR_014882' => 'dca', 'DCAR_017820' => 'dca', 'DCAR_019641' => 'dca', 'DCAR_023400' => 'dca', 'DCAR_026950' => 'dca', 'DCAR_030422' => 'dca', 'Dinv12092' => 'din', 'Dinv13304' => 'din', 'Dinv15957' => 'din', 'Dinv18026' => 'din', 'Dinv18239' => 'din', 'Dinv26660' => 'din', 'Dinv29515' => 'din', 'Dinv30155' => 'din', 'Dinv33163' => 'din', 'Duzib151G0280' => 'dzi', 'Duzib168G0966' => 'dzi', 'Duzib168G2147' => 'dzi', 'Duzib187G1492' => 'dzi', 'Duzib212G0655' => 'dzi', 'Duzib213G0134' => 'dzi', 'ECA233G1961' => 'eca', 'ECA234G0048' => 'eca', 'ECA236G2035' => 'eca', 'ECA240G1590' => 'eca', 'ECA246G1535' => 'eca', 'EL10Ac1g01769' => 'bvu', 'EL10Ac2g02620' => 'bvu', 'EL10Ac4g08508' => 'bvu', 'EL10Ac8g18647' => 'bvu', 'Eucgr.B03955' => 'egr', 'Eucgr.C01760' => 'egr', 'Eucgr.C02790' => 'egr', 'Eucgr.C04216' => 'egr', 'Eucgr.F03197' => 'egr', 'Eucgr.H04120' => 'egr', 'FAN07G0388' => 'fan', 'FAN11G1508' => 'fan', 'FAN12G3361' => 'fan', 'FAN15G3027' => 'fan', 'FAN16G0637' => 'fan', 'FAN17G2049' => 'fan', 'FAN19G1254' => 'fan', 'FAN20G1469' => 'fan', 'FAN21G3159' => 'fan', 'FAN23G1711' => 'fan', 'FAN24G2488' => 'fan', 'FAN25G2253' => 'fan', 'FAN26G1422' => 'fan', 'FAN27G3514' => 'fan', 'FAN28G1613' => 'fan', 'FvH4_1g03360' => 'fve', 'FvH4_2g29300' => 'fve', 'FvH4_3g16500' => 'fve', 'FvH4_4g21460' => 'fve', 'Glyma.03G223200' => 'gma', 'Glyma.04G067700' => 'gma', 'Glyma.06G069300' => 'gma', 'Glyma.08G175600' => 'gma', 'Glyma.09G078700' => 'gma', 'Glyma.13G120000' => 'gma', 'Glyma.13G167600' => 'gma', 'Glyma.15G188900' => 'gma', 'Glyma.15G251000' => 'gma', 'Glyma.17G040300' => 'gma', 'Glyma.17G115200' => 'gma', 'Glyma.19G220400' => 'gma', 'Gohir.A01G036200' => 'ghi', 'Gohir.A04G047200' => 'ghi', 'Gohir.A05G016600' => 'ghi', 'Gohir.A05G054600' => 'ghi', 'Gohir.A06G098200' => 'ghi', 'Gohir.A08G252300' => 'ghi', 'Gohir.A09G067300' => 'ghi', 'Gohir.A13G183400' => 'ghi', 'Gohir.D01G023595' => 'ghi', 'Gohir.D05G017600' => 'ghi', 'Gohir.D05G056400' => 'ghi', 'Gohir.D05G333000' => 'ghi', 'Gohir.D06G099200' => 'ghi', 'Gohir.D08G273900' => 'ghi', 'Gohir.D09G066900' => 'ghi', 'Gohir.D13G189700' => 'ghi', 'Gorai.002G032000' => 'gra', 'Gorai.004G292400' => 'gra', 'Gorai.006G081400' => 'gra', 'Gorai.009G018000' => 'gra', 'Gorai.009G057400' => 'gra', 'Gorai.009G358100' => 'gra', 'Gorai.010G114100' => 'gra', 'Gorai.013G215300' => 'gra', 'GSVIVG01015524001' => 'vvi', 'GSVIVG01017682001' => 'vvi', 'GSVIVG01027148001' => 'vvi', 'GSVIVG01028211001' => 'vvi', 'HanXRQChr03g0062651' => 'han', 'HanXRQChr06g0180291' => 'han', 'HanXRQChr09g0245821' => 'han', 'HanXRQChr11g0329971' => 'han', 'HanXRQChr11g0348921' => 'han', 'HanXRQChr12g0356291' => 'han', 'Haze_00774' => 'cav', 'Haze_05128' => 'cav', 'Haze_08504' => 'cav', 'Haze_21534' => 'cav', 'Haze_25594' => 'cav', 'Hma1.2p1_0000F.1_g000250' => 'hma', 'Hma1.2p1_0018F.1_g012470' => 'hma', 'Hma1.2p1_0198F.1_g085420' => 'hma', 'Hma1.2p1_0484F.1_g162920' => 'hma', 'Hma1.2p1_1160F.1_g262520' => 'hma', 'Hma1.2p1_3778F.1_g337560' => 'hma', 'Hma1.2p1_4173F.1_g338410' => 'hma', 'HPP92_003370' => 'vpl', 'HPP92_004159' => 'vpl', 'HPP92_011274' => 'vpl', 'HPP92_011295' => 'vpl', 'HPP92_016889' => 'vpl', 'Hund10237' => 'sun', 'Hund17603' => 'sun', 'Hund26619' => 'sun', 'Lalb_Chr01g0016001' => 'lal', 'Lalb_Chr04g0257081' => 'lal', 'Lalb_Chr04g0260161' => 'lal', 'Lalb_Chr07g0178941' => 'lal', 'Lalb_Chr08g0233031' => 'lal', 'Lalb_Chr11g0072081' => 'lal', 'Lalb_Chr11g0073531' => 'lal', 'Lalb_Chr12g0197931' => 'lal', 'Lalb_Chr13g0301891' => 'lal', 'Lalb_Chr18g0046481' => 'lal', 'Lalb_Chr23g0268601' => 'lal', 'Lj1A808T27' => 'lonja', 'Lj1A9G43' => 'lonja', 'Lj1g0014400' => 'lja', 'Lj1g0018517' => 'lja', 'Lj3g0004844' => 'lja', 'Lj3g0018021' => 'lja', 'Lj4g0024289' => 'lja', 'Lj6C700T8' => 'lonja', 'Lj6g0005825' => 'lja', 'Lj7P630T36' => 'lonja', 'Lj7P720T47' => 'lonja', 'Lj8A141G34' => 'lonja', 'Lj8C718T0' => 'lonja', 'Lju3824A0T32' => 'lonja', 'Lsat_1_v5_gn_0_45480' => 'lsa', 'Lsat_1_v5_gn_1_39900' => 'lsa', 'Lsat_1_v5_gn_3_127600' => 'lsa', 'Lsat_1_v5_gn_5_121040' => 'lsa', 'Lsat_1_v5_gn_5_96080' => 'lsa', 'Lsat_1_v5_gn_7_45460' => 'lsa', 'Lsat_1_v5_gn_7_99681' => 'lsa', 'Lsat_1_v5_gn_8_58780' => 'lsa', 'Lsat_1_v5_gn_8_58821' => 'lsa', 'Manes.03G016000' => 'mes', 'Manes.03G083603' => 'mes', 'Manes.03G211400' => 'mes', 'Manes.16G120800' => 'mes', 'Mapoly0009s0170' => 'mpo', 'Mapoly0031s0081' => 'mpo', 'MBI01_g40019_MAGBIO' => 'mbi', 'MBI01_g47381_MAGBIO' => 'mbi', 'MBI02_g24303_MAGBIO' => 'mbi', 'MBI04_g08007_MAGBIO' => 'mbi', 'MBI04_g09719_MAGBIO' => 'mbi', 'MBI06_g17220_MAGBIO' => 'mbi', 'MBI16_g00824_MAGBIO' => 'mbi', 'MCO04G298' => 'mco', 'MCO05G638' => 'mco', 'MCO08G148' => 'mco', 'MCO10G351' => 'mco', 'MCO11G644' => 'mco', 'MCO12G280' => 'mco', 'MCO15G643' => 'mco', 'MCO16G364' => 'mco', 'MD02G1033200' => 'mdo', 'MD05G1209500' => 'mdo', 'MD08G1148300' => 'mdo', 'MD10G1195800' => 'mdo', 'MD13G1141000' => 'mdo', 'MD14G1135800' => 'mdo', 'MD15G1123800' => 'mdo', 'MD15G1173600' => 'mdo', 'MD16G1137100' => 'mdo', 'Medtr0011s0320' => 'mtr', 'Medtr0662s0010' => 'mtr', 'Medtr2g070400' => 'mtr', 'Medtr3g107470' => 'mtr', 'Medtr4g114360' => 'mtr', 'Medtr4g123900' => 'mtr', 'Medtr7g110380' => 'mtr', 'MELO3C003206.2' => 'cme', 'MELO3C003692.2' => 'cme', 'MELO3C004512.2' => 'cme', 'MELO3C006748.2' => 'cme', 'MELO3C011253.2' => 'cme', 'MELO3C016164.2' => 'cme', 'MELO3C033476.2' => 'cme', 'Migut.A00051' => 'egut', 'Migut.G01157' => 'egut', 'Migut.H02069' => 'egut', 'Migut.K00475' => 'egut', 'Migut.N00004' => 'egut', 'Migut.N03057' => 'egut', 'MSTRG.14271' => 'ama', 'MSTRG.19599' => 'ama', 'MSTRG.22039' => 'ama', 'MSTRG.26001' => 'ama', 'MSTRG.6704' => 'ama', 'MSTRG.9728' => 'ama', 'Nitab4.5_0000109g0290' => 'nta', 'Nitab4.5_0000209g0040' => 'nta', 'Nitab4.5_0000212g0260' => 'nta', 'Nitab4.5_0000923g0080' => 'nta', 'Nitab4.5_0001864g0040' => 'nta', 'Nitab4.5_0002209g0180' => 'nta', 'Nitab4.5_0002658g0110' => 'nta', 'Nitab4.5_0002957g0030' => 'nta', 'Nitab4.5_0003841g0030' => 'nta', 'Nitab4.5_0005011g0010' => 'nta', 'Nitab4.5_0005761g0090' => 'nta', 'Nitab4.5_0007320g0030' => 'nta', 'Nitab4.5_0009476g0020' => 'nta', 'Nitab4.5_0015673g0010' => 'nta', 'Nn2g12016' => 'nnu', 'Nn2g13022' => 'nnu', 'Nn3g17094' => 'nnu', 'Nn3g20390' => 'nnu', 'Nn4g22999' => 'nnu', 'Nn6g35752' => 'nnu', 'Nn8g39439' => 'nnu', 'Oeu003963.1' => 'oeu', 'Oeu006391.3' => 'oeu', 'Oeu007496.1' => 'oeu', 'Oeu009894.1' => 'oeu', 'Oeu016619.1' => 'oeu', 'Oeu018051.1' => 'oeu', 'Oeu024197.1' => 'oeu', 'Oeu025322.2' => 'oeu', 'Oeu035498.1' => 'oeu', 'Oeu037625.1' => 'oeu', 'Oeu042680.1' => 'oeu', 'Oeu052122.1' => 'oeu', 'Oeu055884.1' => 'oeu', 'Oeu060158.1' => 'oeu', 'Os01g0802850' => 'osa', 'Os03g0301900' => 'osa', 'Os03g0622700' => 'osa', 'Os03g0702700' => 'osa', 'Os05g0494500' => 'osa', 'Os08g0135100' => 'osa', 'Os10g0486200' => 'osa', 'Os11g0139400' => 'osa', 'Os12g0136100' => 'osa', 'Peaxi162Scf00035g01819' => 'pax', 'Peaxi162Scf00073g01310' => 'pax', 'Peaxi162Scf00111g00633' => 'pax', 'Peaxi162Scf00166g00427' => 'pax', 'Peaxi162Scf00436g00001' => 'pax', 'Peaxi162Scf00643g00035' => 'pax', 'Peaxi162Scf00991g00219' => 'pax', 'PGR031G0778' => 'pgr', 'PGR031G1486' => 'pgr', 'PGR044G0558' => 'pgr', 'PGR102G0443' => 'pgr', 'PGSC0003DMG400001459' => 'stu', 'PGSC0003DMG400002944' => 'stu', 'PGSC0003DMG400015857' => 'stu', 'PGSC0003DMG400020475' => 'stu', 'PGSC0003DMG400021291' => 'stu', 'PGSC0003DMG400024280' => 'stu', 'PGSC0003DMG400025156' => 'stu', 'PGSC0003DMG400027634' => 'stu', 'Phvul.001G216900' => 'pvu', 'Phvul.003G121200' => 'pvu', 'Phvul.003G164100' => 'pvu', 'Phvul.005G052200' => 'pvu', 'Phvul.009G093900' => 'pvu', 'Phvul.009G219500' => 'pvu', 'Potri.001G394500' => 'ptr', 'Potri.006G252500' => 'ptr', 'Potri.008G214300' => 'ptr', 'Potri.010G001700' => 'ptr', 'Potri.018G028900' => 'ptr', 'Pp3c10_15150' => 'ppa', 'Pp3c20_2820' => 'ppa', 'Pp3c23_18110' => 'ppa', 'Pp3c3_23596' => 'ppa', 'Pp3c3_23610' => 'ppa', 'Pp3c8_22570' => 'ppa', 'PRCOL_00001019' => 'pco', 'PRCOL_00001390' => 'pco', 'PRCOL_00004124' => 'pco', 'PRCOL_00006253' => 'pco', 'Prupe.1G106200' => 'ppe', 'Prupe.1G479300' => 'ppe', 'Prupe.4G148000' => 'ppe', 'Prupe.7G242100' => 'ppe', 'Psat0s2012g0120' => 'psa', 'Psat1g010840' => 'psa', 'Psat1g027200' => 'psa', 'Psat3g017920' => 'psa', 'Psat4g039640' => 'psa', 'Psat5g031240' => 'psa', 'PSO170G2164' => 'pso', 'PSO210G1462' => 'pso', 'PSO210G3476' => 'pso', 'PSO210G5412' => 'pso', 'PSO455G0245' => 'pso', 'PSO541G6432' => 'pso', 'PSO675G2861' => 'pso', 'PSO832G0943' => 'pso', 'QL02p022110' => 'qlo', 'QL02p088254' => 'qlo', 'QL04p071264' => 'qlo', 'QL06p014135' => 'qlo', 'QL12p034484' => 'qlo', 'RcHm_v2.0_Chr2g0085641' => 'rch', 'RcHm_v2.0_Chr2g0085661' => 'rch', 'RcHm_v2.0_Chr2g0088591' => 'rch', 'RcHm_v2.0_Chr4g0427391' => 'rch', 'RcHm_v2.0_Chr4g0427471' => 'rch', 'RcHm_v2.0_Chr4g0427491' => 'rch', 'RcHm_v2.0_Chr4g0427501' => 'rch', 'RcHm_v2.0_Chr5g0027551' => 'rch', 'RcHm_v2.0_Chr5g0059661' => 'rch', 'RcHm_v2.0_Chr6g0298121' => 'rch', 'Rhsim04G0033000' => 'rsi', 'Rhsim04G0247900' => 'rsi', 'Rhsim09G0170500' => 'rsi', 'Rhsim13G0000100' => 'rsi', 'Sabra06G0197400' => 'sbr', 'Sabra10G0001400' => 'sbr', 'Sabra16G0258800' => 'sbr', 'Sabra18G0031100' => 'sbr', 'SalBow1G7191' => 'sbo', 'SalBow1G7879' => 'sbo', 'SalBow1G8290' => 'sbo', 'SalBow2G0184' => 'sbo', 'SalBow2G0421' => 'sbo', 'SalBow2G1089' => 'sbo', 'SalBow2G1889' => 'sbo', 'SalBow2G2906' => 'sbo', 'SalBow2G3210' => 'sbo', 'SalBow2G3646' => 'sbo', 'SalBow3G0181' => 'sbo', 'SalBow3G0559' => 'sbo', 'SalBow3G0976' => 'sbo', 'SalBow3G1275' => 'sbo', 'SalBow3G1706' => 'sbo', 'SalBow4G0042' => 'sbo', 'SalBow4G0236' => 'sbo', 'SalBow4G0345' => 'sbo', 'SalBow4G0855' => 'sbo', 'SalBow4G1370' => 'sbo', 'SalBow4G1620' => 'sbo', 'SalBow4G3247' => 'sbo', 'SalBow5G1306' => 'sbo', 'SalBow5G1912' => 'sbo', 'SalBow5G3529' => 'sbo', 'SalBow5G3963' => 'sbo', 'SalBow5G5021' => 'sbo', 'SalBow6G1353' => 'sbo', 'SalBow6G1476' => 'sbo', 'SalBow6G3980' => 'sbo', 'SalBow6G4296' => 'sbo', 'SalBow6G5435' => 'sbo', 'SalBow7G0228' => 'sbo', 'SalBow7G3312' => 'sbo', 'SalBow7G4799' => 'sbo', 'SalBow8G0208' => 'sbo', 'SalBow8G1895' => 'sbo', 'Sc01g0002490' => 'sci', 'Sc01g0002500' => 'sci', 'Sc06g0000640' => 'sci', 'Sc08g0006650' => 'sci', 'Sc10g0008510' => 'sci', 'Sc18g0000620' => 'sci', 'Sed0002221' => 'sed', 'Sed0006663' => 'sed', 'Sed0012072' => 'sed', 'Sed0015802' => 'sed', 'Sed0017811' => 'sed', 'Sed0018417' => 'sed', 'Sed0020754' => 'sed', 'Sed0025915' => 'sed', 'SEGI_04336' => 'sgi', 'SEGI_17772' => 'sgi', 'SEGI_24452' => 'sgi', 'SEGI_31276' => 'sgi', 'SGA_v2.0_scaffold163G37982' => 'sas', 'SGA_v2.0_scaffold163G37986' => 'sas', 'SGA_v2.0_scaffold169G38725' => 'sas', 'SGA_v2.0_scaffold169G38728' => 'sas', 'SGA_v2.0_scaffold181G39774' => 'sas', 'SGA_v2.0_scaffold20G09138' => 'sas', 'SGA_v2.0_scaffold227G43199' => 'sas', 'SGA_v2.0_scaffold449G51792' => 'sas', 'SGA_v2.0_scaffold70G23551' => 'sas', 'SGA_v2.0_scaffold73G24362' => 'sas', 'SHI00060' => 'shi', 'SHI18566' => 'shi', 'SMO119G0146' => 'smo', 'SMO119G0237' => 'smo', 'SMO271G0073' => 'smo', 'Solyc02g066910.3' => 'sly', 'Solyc02g088900.3' => 'sly', 'Solyc06g066070.1' => 'sly', 'Solyc07g056530.3' => 'sly', 'Solyc08g060940.1' => 'sly', 'Solyc10g007610.4' => 'sly', 'Solyc12g006500.1' => 'sly', 'Sopen02g016100' => 'spe', 'Sopen02g033590' => 'spe', 'Sopen06g024550' => 'spe', 'Sopen07g029890' => 'spe', 'Sopen08g016060' => 'spe', 'Sopen10g003530' => 'spe', 'Sopen12g002440' => 'spe', 'Sp1g35190' => 'spa', 'Sp2g22150' => 'spa', 'Sp3g12700' => 'spa', 'Sp3g15600' => 'spa', 'Sp4g04800' => 'spa', 'Sp6g32330' => 'spa', 'Sp7g30170' => 'spa', 'TAR365G0528' => 'tar', 'TAR365G0537' => 'tar', 'TAR383G0403' => 'tar', 'TAR625G0282' => 'tar', 'TAR625G1255' => 'tar', 'TAR626G1521' => 'tar', 'TAR629G1654' => 'tar', 'TAR633G1520' => 'tar', 'TAR636G1487' => 'tar', 'TAR640G0003' => 'tar', 'THA.LOC104799230' => 'tha', 'THA.LOC104802615' => 'tha', 'THA.LOC104803835' => 'tha', 'THA.LOC104815015' => 'tha', 'THA.LOC104818622' => 'tha', 'THA.LOC104821811' => 'tha', 'THA.LOC104822607' => 'tha', 'Thecc.04G312300' => 'tca', 'Thecc.07G147600' => 'tca', 'Thecc.09G027000' => 'tca', 'Thecc.09G125800' => 'tca', 'Thhalv10000222m.g' => 'esa', 'Thhalv10004502m.g' => 'esa', 'Thhalv10011587m.g' => 'esa', 'Thhalv10011710m.g' => 'esa', 'Thhalv10013985m.g' => 'esa', 'Thhalv10020956m.g' => 'esa', 'Thhalv10021088m.g' => 'esa', 'Thhalv10025602m.g' => 'esa', 'TPR.G10714' => 'tpr', 'TPR.G12557' => 'tpr', 'TPR.G21249' => 'tpr', 'TPR.G28705' => 'tpr', 'TPR.G29762' => 'tpr', 'TPR.G4044' => 'tpr', 'TWI09G0158' => 'twi', 'TWI32G0112' => 'twi', 'TWI34G1896' => 'twi', 'TWI38G1230' => 'twi', 'TWI63G0342' => 'twi', 'unitig_0.g2770' => 'ugi', 'unitig_26.g10602' => 'ugi', 'unitig_578.g16564' => 'ugi', 'unitig_749.g13348' => 'ugi', 'unitig_8.g3104' => 'ugi', 'unitig_8.g5053' => 'ugi', 'vmacro02364' => 'vma', 'vmacro05184' => 'vma', 'vmacro06128' => 'vma', 'vmacro08008' => 'vma', 'vmacro09445' => 'vma', 'vmacro20552' => 'vma', 'VMungo0331G0861' => 'vmu', 'VMungo1080G0682' => 'vmu', 'VMungo1215G1179' => 'vmu', 'VMungo1309G1450' => 'vmu', 'VMungo1309G2024' => 'vmu', 'VMungo1383G1303' => 'vmu', 'Zm00001eb054220' => 'zma', 'Zm00001eb291530' => 'zma', 'Zm00001eb352390' => 'zma', 'Zm00001eb369360' => 'zma', 'Zm00001eb417010' => 'zma' ) $gf_id = 'HOM05D000753' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000753' ) $data_identifier = 'HOM05D000753' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 9, 'aox' => (int) 9, 'arhy' => (int) 11, 'ath' => (int) 8, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 11, 'bca' => (int) 25, 'bol' => (int) 14, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 9, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 10, 'csa' => (int) 7, 'camsi' => (int) 25, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 4, 'han' => (int) 6, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 11, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 4, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 8, 'mdo' => (int) 9, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 6, 'pco' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 10, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 37, 'sci' => (int) 6, 'sed' => (int) 8, 'sgi' => (int) 4, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb417010' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1